Error in DPARSF 4.1 for Rat Data

Submitted by mariambehboudi on Fri, 11/11/2016 - 10:21

Hi everyone

When I choose yes in DPARSF 4.1 for Rat Data, I face this error. What should I do now?

Error using subsindex

Function 'subsindex' is not defined for values of class 'matlab.ui.Figure'.

Error in y_spm_orthviews>specify_image (line 654)

while ~isempty(st{curfig}.vols{ii}), ii = ii + 1; end

Error in y_spm_orthviews (line 281)

H = specify_image(varargin{1});

Error in DPABI_VIEW_DPABI_VIEW_OpeningFcn (line 108)

y_spm_orthviews('Image',UnderlayHeader);

Error in gui_mainfcn (line 220)

feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:});

Error in DPABI_VIEW (line 41)

[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});

Error in w_Call_DPABI_VIEW (line 38)

curfig=DPABI_VIEW;

Error in dpabi>pushbutton_DPARSFRat_Callback (line 175)

uiwait(w_Call_DPABI_VIEW([],[],[],[],[],[TemplatePath,filesep,'SchwarzRatTemplates',filesep,'rat97t2w_96x96x30.v6.nii']));

Error in gui_mainfcn (line 95)

feval(varargin{:});

Error in dpabi (line 42)

gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)dpabi('pushbutton_DPARSFRat_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating UIControl Callback

Best

Mariam

Re: [RFMRI] Error in DPARSF

What matlab version are y uzing ? Do y have the last version of dpabi master and spm12

Get Outlook for Android

From: RFMRI.ORG <rfmri.org-bounces@rnet.co> on behalf of The R-fMRI Network <rfmri.org@gmail.com>
Sent: Friday, November 11, 2016 5:21:20 AM
To: rfmri.org@rnet.co
Subject: [RFMRI] Error in DPARSF 4.1 for Rat Data

Error in DPARSF 4.1 for Rat Data

I use MATLAB 2015a and SPM 12 and dpabi 4.1.

Probably update SPM12 and

Probably update SPM12 and dpabi again can solve that.

Re: [RFMRI] Error in DPARSF

Hi Im running two sample T test between two group Control and Patient (FC Zmap), after correction with GRF ( voxel p<0.025, cluster p<0.1, two tailed). I got some correlation with my seed and Cingulum cortex in the control group ( that was my hypothesis), but nothing in the other side with patient group.

then I run separate One sample t test for my FC Zmap for each group separately , after using GRF ( voxel p<0.01, cluster p<0.05, one tailed). I got some correlation with my seed in both group. with the control group with Cingulum cortex and with patient group with Caudal_putamen ( that was my hypothesis)

1- My first question is the p value that i enter of GRF correction are Right ? is it a valid Test ?
2-Why could not see the same effect for two sample T test in patient group
3- how can i interpret my one sample T test : can i say that there is a difference between the two group ?

Best wishes

Get Outlook for Android

1. Valid.

2. It's common you can not see symmetric differences.

3. Between group differences can not be inferred from one sample t tests.

Re: [RFMRI] Error in DPARSF

I have run 3 sessions separately, how can I average all session together ?...my final file : FunImgRWSCF

Thank you

From: Marouane Nassim
Sent: Monday, November 28, 2016 7:30:24 AM
To: The R-fMRI Network; rfmri.org@rnet.co
Subject: Re: [RFMRI] Error in DPARSF 4.1 for Rat Data

Hi
Im running two sample T test between two group Control and Patient (FC Zmap), after correction with GRF ( voxel p<0.025, cluster p<0.1, two tailed). I got some correlation with my seed and Cingulum cortex in the control group ( that was my hypothesis), but nothing in the other side with patient group.

Best wishes

Get Outlook for Android

Hi,

You can use the Image Calculator function (in the Utilities module), but it needs to be on the postprocessing output (and I think it needs to be the r-to-z transformed files, perhaps someone else can confirm this?). Also, it may be better to put coregistration and filtering before normalization and smoothing, and include slice-time correction (ARCFWS).

Best,

Felix

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