DPABI/DPABISurf/DPARSF

Hello,

if using already preprocessed files, I name the folder with the preprocessed functional nifti-files FunImgSARW (smoothed, slice-timing corrected, realigned, normalized). Do I have to rename the structural folder as well (such as e.g. T1ImgRW, because the structural data is not smoothed) or can I keep the name T1Img?

Thanks!

Cheers,

Sascha

Dear all,

I am completely new to DPARSFA so this is a very basic question:

After you select the options on the GUI and save the mat file is it possible to run DPARSF from the command line?  The only machine I can run DPARSF that has the necessary Matlab toolboxes is on a linux cluster. I can easily submit jobs but am not permitted to run the GUI on the cluster.  I am hoping that once the mat file is set kicking off the Analysis (i.e pushing the Run button) could be accomplished from the command line.

Thanks for your help.

Bob

  Good morning,

I am currently trying to preprocess my data currently and I have faced the same error a couple of times despite trying to debug this issue, any ideas?

best wishes

Dan

Dear Chao-Gan,

I am seeking a whole-brain template or mask which segments brain into a few (not too many, best <10) large-scale functional networks.

Hello!

I would like to perform scrubbing on my already preprocessed data. In the Power (2012) paper they say to do it after functional connectivity has been done. Is that possible in DPRSFA? If yes, how should I do it? What is the starting directory name in the toolbox?

Thank you for your help,

Emilia Cheladze

Dear prof YAN

the Cluster Connectivity Criterion could be chosen among 6 voxels (surface), 18 voxels (edge) or 26 voxels (corner) according to rmm value.

what different between three type of criterion, and which is the best?

Hi, I am receiving the following error trying to complete standardization: 

??? Out of memory. Type HELP MEMORY for your options.

Error in ==> var at 87
    y = sum(abs(x).^2, dim) ./ denom; % abs guarantees a real result

Error in ==> std at 32
y = sqrt(var(varargin{:}));

Error in ==> y_Standardization at 84
Std_AllSub = std(AllVolume)';

Dear experts,

    Recently I just tried using the DPARSF v4.1 to preprocess my resting fmri data, but somehow always could not finish it, reminding the mistake in time point when maybe last step to normalize. Strange thing is I specially checked all the data, there is no wrong in FunRaw. So I am totally confused. Below I showed some screenshots with the template parameters I set and some details of the mistake that Matlab warned.

Best regards,

Xin