DPABI/DPABISurf/DPARSF

segment error with customized tpm.nii

Submitted by wangmx on

Dear Professor, thanks for your attention.

 When I used DPABI to preprocess  task fMRI data by New Segment + DARTEL, the default tpm.nii ( {DPABI}/Templates/SPMTemplates/tpm/TPM.nii) was replaced by the Chinese pediatric tpm.nii in CHNPD_v1.5. 

(software version: dpabi 5.0, spm 12, CHNPD_v1.5, matlabR20105b)

Implementing FielMap correction with magnitude and phase files already converted to .nii

Submitted by JulianG on

 

Dear Forum,

I preprocess fMRI data which has been converted to .nii format. I wonder how I could use FieldMap correction when the magnitude and phase1 phase2 images are in .nii. The toolbox seems to read only dcm files for this particular step. I unsuccesfully tried out the following data structure:  

How do I use the DPABI_VIEW interface surface view with BrainNet Viewer

Submitted by yangfan on

Dear teacher, I want to use brainnet viewer under DPABI_VIEW interface to display the results, but the following error occurs during the opening process. How can I solve it?

Subscript indices must either be real positive integers or logicals.

BET went wrong for T1.nii that was flipped from left to right using Python-nibabel.

Submitted by Lena_Wang on
Predefined Types

Here is the problem. I need to flip some T1.nii data from left to right, making all lesion located in the left hemisphere. By using nibabel package by Python laguage, I got some flipped data.

However, when I running the BET function on those data within DPARSFA, it suggested : Not enough data in D:\Lena\000test\T1ImgBet\Sub_003\fBet_003BeforeBet.img.