DPABI/DPABISurf/DPARSF

dpabisurf预处理时出现了问题

Submitted by Lee on
        严老师好,各位老师好,我用dpabisurf预处理数据的时候出了点问题,希望能得到你们的解答。数据处理在显示这个之后就没有变化了,已经维持这个状态2天不动了,也没有报错。查看CPU,使用率都不超过15%,感觉是没有在工作了。是否需要更新软件的版本呢?国庆前也处理了一批短TR时间的数据,因为TR只有0.5S,所以没有做时间校正,这批数据的预处理倒是能顺利地跑到最后了。

Error using y_ExtractROISignal_Surf (line 157)/Error using y_ExtractROISignal (line 240)

Submitted by Zeqiang Linli on
Predefined Types

Hi, Dr. Yan, 

While I used the DPABI_Utilities to extract values from the preprocessed images (gifti/nifti), an error as following occured. I tried to debug including: 1) change the version of dpabi; 2)  runs on other computers; 3) change the other atlas; 4) re-set matlab path, however, the error still occured.

For nifti data:

Error with the Preprocessing for Task fMRI data in DPARSF 5.2

Submitted by giovifaz1 on

Hi, Dr. Yan, 

In these 2 days I've encountered several problems using DPARSF 5.2, expecially with the Preprocessing for Task fMRI data, and I'd like to ask you some suggestions to fix the anomalies. In particular, the error starts when I try to open the window to set up the preprocessing, it crashes immediately, showing in the command window these errors:

"Operands to the logical and (&&) and or (||) operators must be convertible to logical scalar values.

How to solve the error while running for fmriprep?

Submitted by sunnystar2013 on

Hi, Dr. Yan,

When I run the subjects in DPABISurf, there are two subjects cannot be processed at the fmriprep while others can? Could you please have a look and give me some suggestions on how to deal with it? Attached please find the error info and the file. Thank you for your expended time in advance!

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Generate group mask - wautomask missing

Submitted by jdronse on

Dear DPABI team,

I try to create the 90% EPI coverage mask using the respective function in quality control. I preprocessed the data using DPABIsurf pipeline and fMRIprep. 

I keep getting the error message 

Reading images from "/Users/julian/Documents/Research/DPABI_Surf_neworder/Masks/AutoMasks/wAutoMask_Sub_001.nii" etc.

Error using y_Read (line 54)

请教DPABISurf在Linux中跑出结果的root所有者问题

Submitted by sunnystar2013 on

各位老师好:

最近刚开始接触DPABISurf和Docker,我想请教Linux下一个关于Docker运行结果的所有者的问题。

首先,按照下面的方法,在Linux上让管理员用root账户配置了我的账号:

# 添加 docker 用户组

sudo groupadd docker

# 把需要执行的 docker 用户添加进该组,这里是 ABC

sudo gpasswd -a ABC docker

# 重启 docker

统计分析-GRF

Submitted by Anna01 on

各位老师您好:

         我在进行统计分析的多重校正时,选用了GRF。发现系统默认的平滑核的数值和运行了平滑估计的值相差较大,请问是否应该重新估计平滑核呢(前期的数据预处理均是利用DPARSFA进行的,但是由于多中心,然后利用代码进行了ComBat)。主要是利用默认值和估计平滑核之后得到的结果相差很大,故来请教一下老师,这种情况应该怎样选择和处理呢?