DPABI/DPABISurf/DPARSF

Run Dpabisurf with command line

Submitted by YX on

严老师您好,我在服务器上运行Dpabisurf时,需要写成Linux脚本任务调用dpabisurf时有几个问题,请严老师提供帮助,

1,代码中的/opt/DPABI/DPABI_StandAlone/run_DPABISurf_run_StandAlone.sh一般存放在什么位置,我在DPABI文件夹中没有找到,

2,${MCRPath}是指matlab中runtime文件夹中MCR路径是吗?

3,/data/DPABISurf_Cfg.mat 这里的data需要替换成My DATA PATH吗?

谢谢严老师!

Slice order in DPABI

Submitted by Zeqiang Linli on

Dear Dr. Yan, 

DAPBI can get a .josn file from FunRaw data in which the information of slice timing seems to be provided. For example,  the json file have a field: 

"Slice tieming" :[
0.99,
0,
1.045,
....
1.925,
0.935]

I think it indirectly tell us the slice number (=36) and slice order (here is interval ascending).

dpabi net 做NBS统计报错

Submitted by Lee on

严老师好,各位老师好,我使用dpabi net做网络分析的时候在做统计时遇到了报错,报错显示如下,不明白为啥双侧大小不一样。预处理是用dpabiSurf来做的,不过这里网络用的是FunVoluWCF这个文件夹的体积文件提取的,并没有做surf的网络。期待你们的解答,非常感谢。

 

dpabi net 做NBS统计报错

Submitted by Lee on

严老师好,各位老师好,我使用dpabi net做网络分析的时候在做统计时遇到了报错,报错显示如下,不明白为啥双侧大小不一样。预处理是用dpabiSurf来做的,不过这里网络用的是FunVoluWCF这个文件夹的体积文件提取的,并没有做surf的网络。期待你们的解答,非常感谢。

 

Parallel computation in the stage of "Prepprocessing with fmriprep".

Submitted by Zeqiang Linli on

Dear Dr. Yan

When I used the DpabiSurf to pre-processe the DemoData posted in this website, I noted that the parallel computation in matlab was not work during the stages of “Convert to BIDS” and “Preprocessing with fmriprep”, in other word, 3 subjects was preprocessed  one by one in order, which is very time comsuming. But in the latter stages such as “slice order”, the parallel computation was work. Although that, “Preprocessing with fmriprep” is the most time comsuming stage and we may more need to do parallel computation in this stage.

Dreho报错

Submitted by TY on
ead these 3D EPI functional images. wait...
 
Read these 3D EPI functional images. wait...
 
Read these 3D EPI functional images. wait...
 
Read these 3D EPI functional images. wait...
 
Read these 3D EPI functional images. wait...
 
Read these 3D EPI functional images.

Dreho报错

Submitted by TY on
ead these 3D EPI functional images. wait...
 
Read these 3D EPI functional images. wait...
 
Read these 3D EPI functional images. wait...
 
Read these 3D EPI functional images. wait...
 
Read these 3D EPI functional images. wait...
 
Read these 3D EPI functional images.

DPABISurf中fmriprep出现报错

Submitted by user_1513 on
A batch of data is divided into 11 groups to run. The first few groups finished running, but the later groups appeared warning. They didn't run a complete project, and there was no result report. How can we solve this problem? In addition, in the fmriprep folder of each group, there are record folders in the subjects' folder, and the report has been uploaded.
 
I would like to ask if this report has any impact on the subsequent cortical statistics? Thank you, teacher