DPABI/DPABISurf/DPARSF

i followed the instruction of Doc. yan_DPABISurf Installation on Windows | The R-fMRI Network (rfmri.org)

when i finally test the dpabisurf processing by running utilities as the instruction, matlab returns:

docker : invalid reference format. 

see "docker run --help"

besides, there is no report of error during the whole process of installation. 

can anyone help ?

thanks

各位老师好，

        我想请教几个做ICA之前数据预处理的问题：

       1. 我用DPARSF做预处理，除了slice timing, realign, normalize, smooth四步外，是否要做nuiscance covariates regression? 我查的资料看到有两种说法，一种是无需回归协变量因为ICA能够分离独立信号源无惧协变量影响；另一种说法是推荐在上面四步之外加一个Bias correction，但这个Bias correction是SPM做预处理的步骤，不知在DPARSF里面是否对应nuiscance regression?

Dear DPABI team,

first, I would like to thank you for your work and effort – I enjoy working with DPABI. I hope I didn't miss or overread information in this forum about the questions I'll ask in the following, if so I would like to apologize beforehand.

DPABISurf Installation on Windows

Chao-Gan Yan

1.     Update to latest Win 10 or Upgrade to Win 11.

2.     Enable Virtual Technology in BIOS

2.1.  Restart -> Enter BIOS (during rebooting, hit enter and then F1 or FN+F2)

2.2.  Enable “Intel Virtual Technology”

3.     Install WSL

严老师好，各位老师好，

        我在用DPARSFA对rest-fMRI数据进行预处理后，用DPABI-QC-Generate Group Masks生成mask用于统计，但生成的mask与常见的mask不同，看起来像是经过了旋转之后纳入了部分脑外信息（请参见附上的GroupMask90percent.nii），我检查了每个被试的wAutoMask，仅发现部分被试mask有脑内信息缺失，但都没包含脑外部分（如附图wAutoMask1&2.png），当时的预处理过程见附图Preprocess.png。想请教各位老师为什么生成的GroupMask会出现这种情况？这样的mask应该会影响统计了，请问该如何处理呢？

         多谢各位老师解惑，盼回复！

严老师好，各位老师好，

        我在用DPARSFA对rest-fMRI数据进行预处理后，用DPABI-QC-Generate Group Masks生成mask用于统计，但生成的mask与常见的mask不同，看起来像是经过了旋转之后纳入了部分脑外信息（请参见附上的GroupMask90percent.nii），我检查了每个被试的wAutoMask，仅发现部分被试mask有脑内信息缺失，但都没包含脑外部分（如附图wAutoMask1&2.png），当时的预处理过程见附图Preprocess.png。想请教各位老师为什么生成的GroupMask会出现这种情况？这样的mask应该会影响统计了，请问该如何处理呢？

         多谢各位老师解惑，盼回复！

Hi,

Thanks for leting me join the foroum. I am using DPARSFA on Matlab R2019b. I was practicing using online sample data for DPARSFA and it run up to some point (Bet) but at the end I got the below error:

Hi,

Using dpabi, I have successfully pre-processed all subjects in ADNI that include both "resting_state_fMRI" and "MPRAGE SENSE 2" files.

It seems to me that only 770 subjects in ADNI have resting_state_fMRI data.

My question is: are fMRI data always needed to run the pre-processing with dpabi (as I have already done) or is there also a different way that does not require fMRI data?

Thanks,

Dimitris

hi there,

i've preprocessed my data using the standard fmriprep pipeline (not within dpabiSURF). I'm wondering it its possible to run dpabiSURF on the fmriprep processed data to denoise and construct the functional connectome matrices?

Dear Dr.Yan,